List of references at probeBase

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Reference title Pubmed-ID
Comparative study of bacterial groups within the human cecal and fecal microbiota. Marteau P, Pochart P, Doré J, Béra-Maillet C, Bernalier A, Corthier G. Applied and environmental microbiology. 2001. 11571208
Isolation of novel pelagic bacteria from the German bight and their seasonal contributions to surface picoplankton. Eilers H, Pernthaler J, Peplies J, Glöckner FO, Gerdts G, Amann R. Applied and environmental microbiology. 2001. 11679337
In situ characterization of Nitrospira-like nitrite-oxidizing bacteria active in wastewater treatment plants. Daims H, Nielsen JL, Nielsen PH, Schleifer KH, Wagner M. Applied and environmental microbiology. 2001. 11679356
Diagnostic examination of human intestinal spirochetosis by fluorescent in situ hybridization for Brachyspira aalborgi, Brachyspira pilosicoli, and other species of the genus Brachyspira (Serpulina). Jensen TK, Boye M, Ahrens P, Korsager B, Teglbjaerg PS, Lindboe CF, Møller K. Journal of clinical microbiology. 2001. 11682538
Design and application of oligonucleotide probes for fluorescent in situ identification of the filamentous bacterial morphotype Nostocoida limicola in activated sludge. Liu JR, Seviour RJ. Environmental microbiology. 2001. 11683865
Optimization of an oligonucleotide microchip for microbial identification studies: a non-equilibrium dissociation approach. Liu WT, Mirzabekov AD, Stahl DA. Environmental microbiology. 2001. 11722542
Identification of bacteria responsible for ammonia oxidation in freshwater aquaria. Burrell PC, Phalen CM, Hovanec TA. Applied and environmental microbiology. 2001. 11722936
New degenerate Cytophaga-Flexibacter-Bacteroides-specific 16S ribosomal DNA-targeted oligonucleotide probes reveal high bacterial diversity in River Taff epilithon. O'Sullivan LA, Weightman AJ, Fry JC. Applied and environmental microbiology. 2002. 11772628
Single-base-pair discrimination of terminal mismatches by using oligonucleotide microarrays and neural network analyses. Urakawa H, Noble PA, El Fantroussi S, Kelly JJ, Stahl DA. Applied and environmental microbiology. 2002. 11772632
Previously unknown and phylogenetically diverse members of the green nonsulfur bacteria are indigenous to freshwater lakes. Gich F, Garcia-Gil J, Overmann J. Archives of microbiology. 2001. 11797038
Biomonitoring of pJP4-carrying Pseudomonas chlororaphis with Trb protein-specific antisera. Schmidt-Eisenlohr H, Rittig M, Preithner S, Baron C. Environmental microbiology. 2001. 11846762
Microbial diversity of hydrothermal sediments in the Guaymas Basin: evidence for anaerobic methanotrophic communities. Teske A, Hinrichs KU, Edgcomb V, de Vera Gomez A, Kysela D, Sylva SP, Sogin ML, Jannasch HW. Applied and environmental microbiology. 2002. 11916723
Obligate bacterial endosymbionts of Acanthamoeba spp. related to the beta-Proteobacteria: proposal of 'Candidatus Procabacter acanthamoebae' gen. nov., sp. nov. Horn M, Fritsche TR, Linner T, Gautom RK, Harzenetter MD, Wagner M. International journal of systematic and evolutionary microbiology. 2002. 11931173
Phylogeny of the filamentous bacterium Eikelboom Type 1851, and design and application of a 16S rRNA targeted oligonucleotide probe for its fluorescence in situ identification in activated sludge. Beer M, Seviour EM, Kong Y, Cunningham M, Blackall LL, Seviour RJ. FEMS microbiology letters. 2002. 11958937
Characterization of lactobacilli towards their use as probiotic adjuncts in poultry. Ehrmann MA, Kurzak P, Bauer J, Vogel RF. Journal of applied microbiology. 2002. 11972703
A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont. Huber H, Hohn MJ, Rachel R, Fuchs T, Wimmer VC, Stetter KO. Nature. 2002. 11986665
Direct quantitative differentiation between Prevotella intermedia and Prevotella nigrescens in clinical specimens. Gmür R, Thurnheer T. Microbiology (Reading, England). 2002. 11988511
Identification of Enterococcus spp. based on specific hybridisation with 16S rDNA probes. Manero A, Blanch AR. Journal of microbiological methods. 2002. 11997162
16S rRNA Targeted Probes for the Identification of Bacterial Strains Isolated from Cultures of the Toxic Dinoflagellate Alexandrium tamarense. Groben R, Doucette GJ, Kopp M, Kodama M, Amann R, Medlin LK. Microbial ecology. 2000. 12035095
Extensive set of 16S rRNA-based probes for detection of bacteria in human feces. Harmsen HJ, Raangs GC, He T, Degener JE, Welling GW. Applied and environmental microbiology. 2002. 12039758
Oligonucleotide probe for detecting Enterobacteriaceae by in situ hybridization. Ootsubo M, Shimizu T, Tanaka R, Sawabe T, Tajima K, Yoshimizu M, Ezura Y, Ezaki T, Oyaizu H. Journal of applied microbiology. 2002. 12067375
Influence of resistant starch on the SCFA production and cell counts of butyrate-producing Eubacterium spp. in the human intestine. Schwiertz A, Lehmann U, Jacobasch G, Blaut M. Journal of applied microbiology. 2002. 12067385
The microbial community composition of a nitrifying-denitrifying activated sludge from an industrial sewage treatment plant analyzed by the full-cycle rRNA approach. Juretschko S, Loy A, Lehner A, Wagner M. Systematic and applied microbiology. 2002. 12086193
Parallel characterization of anaerobic toluene- and ethylbenzene-degrading microbial consortia by PCR-denaturing gradient gel electrophoresis, RNA-DNA membrane hybridization, and DNA microarray technology. Koizumi Y, Kelly JJ, Nakagawa T, Urakawa H, El-Fantroussi S, Al-Muzaini S, Fukui M, Urushigawa Y, Stahl DA. Applied and environmental microbiology. 2002. 12088997
PRIMROSE: a computer program for generating and estimating the phylogenetic range of 16S rRNA oligonucleotide probes and primers in conjunction with the RDP-II database. Ashelford KE, Weightman AJ, Fry JC. Nucleic acids research. 2002. 12140334