List of references at probeBase

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Reference title Pubmed-ID
In situ identification of cyanobacteria with horseradish peroxidase-labeled, rRNA-targeted oligonucleotide probes. Schönhuber W, Zarda B, Eix S, Rippka R, Herdman M, Ludwig W, Amann R. Applied and environmental microbiology. 1999. 10049892
Fluorescence in situ hybridization using 16S rRNA-targeted oligonucleotides reveals localization of methanogens and selected uncultured bacteria in mesophilic and thermophilic sludge granules. Sekiguchi Y, Kamagata Y, Nakamura K, Ohashi A, Harada H. Applied and environmental microbiology. 1999. 10049894
In situ analysis of phototrophic sulfur bacteria in the chemocline of meromictic Lake Cadagno (Switzerland). Tonolla M, Demarta A, Peduzzi R, Hahn D. Applied and environmental microbiology. 1999. 10049902
Rapid and easy detection of Helicobacter pylori by in situ hybridization. Park CS, Kim J. Journal of Korean medical science. 1999. 10102518
Differentiation of methanosaeta concilii and methanosarcina barkeri in anaerobic mesophilic granular sludge by fluorescent In situ hybridization and confocal scanning laser microscopy Rocheleau S, Greer CW, Lawrence JR, Cantin C, Laramee L, Guiot SR. Applied and environmental microbiology. 1999. 10224023
Specific detection of green sulfur bacteria by in situ hybridization with a fluorescently labeled oligonucleotide probe. Tuschak C, Glaeser J, Overmann J. Archives of microbiology. 1999. 10339808
Vertical distribution of methanogens in the anoxic sediment of Rotsee (Switzerland). Zepp Falz K, Holliger C, Grosskopf R, Liesack W, Nozhevnikova AN, Müller B, Wehrli B, Hahn D. Applied and environmental microbiology. 1999. 10347020
Specific oligonucleotide probes for in situ detection of a major group of gram-positive bacteria with low DNA G + C content. Meier H, Amann R, Ludwig W, Schleifer KH. Systematic and applied microbiology. 1999. 10390869
Community analysis of biofilters using fluorescence in situ hybridization including a new probe for the Xanthomonas branch of the class Proteobacteria. Friedrich U, Naismith MM, Altendorf K, Lipski A. Applied and environmental microbiology. 1999. 10427047
Quantification of the flavonoid-degrading bacterium Eubacterium ramulus in human fecal samples with a species-specific oligonucleotide hybridization probe. Simmering R, Kleessen B, Blaut M. Applied and environmental microbiology. 1999. 10427069
Phylogenetic affiliation and quantification of psychrophilic sulfate-reducing isolates in marine Arctic sediments. Sahm K, Knoblauch C, Amann R. Applied and environmental microbiology. 1999. 10473404
Diversity and abundance of Bolidophyceae (Heterokonta) in two oceanic regions. Guillou L, Moon-Van Der Staay SY, Claustre H, Partensky F, Vaulot D. Applied and environmental microbiology. 1999. 10508085
Phylogenetic diversity of methanogenic archaea in swine waste storage pits. Whitehead TR, Cotta MA. FEMS microbiology letters. 1999. 10518719
Physiology, phylogenetic relationships, and ecology of filamentous sulfate-reducing bacteria (genus desulfonema) Fukui M, Teske A, Assmus B, Muyzer G, Widdel F. Archives of microbiology. 1999. 10525735
Quantification of syntrophic fatty acid-beta-oxidizing bacteria in a mesophilic biogas reactor by oligonucleotide probe hybridization. Hansen KH, Ahring BK, Raskin L. Applied and environmental microbiology. 1999. 10543784
Acetogenic and sulfate-reducing bacteria inhabiting the rhizoplane and deep cortex cells of the sea grass Halodule wrightii. Küsel K, Pinkart HC, Drake HL, Devereux R. Applied and environmental microbiology. 1999. 10543830
The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: development and evaluation of a more comprehensive probe set. Daims H, Brühl A, Amann R, Schleifer KH, Wagner M. Systematic and applied microbiology. 1999. 10553296
Enrichment, phylogenetic analysis and detection of a bacterium that performs enhanced biological phosphate removal in activated sludge. Hesselmann RP, Werlen C, Hahn D, van der Meer JR, Zehnder AJ. Systematic and applied microbiology. 1999. 10553298
Quantification of different Eubacterium spp. in human fecal samples with species-specific 16S rRNA-targeted oligonucleotide probes. Schwiertz A, Le Blay G, Blaut M. Applied and environmental microbiology. 2000. 10618251
Fluorescent oligonucleotide rDNA probes for specific detection of methane oxidising bacteria. Bourne DG, Holmes AJ, Iversen N, Murrell JC. FEMS microbiology ecology. 2000. 10620716
Oligonucleotide probes for the identification of three algal groups by dot blot and fluorescent whole-cell hybridization. Simon N, Campbell L, Ornolfsdottir E, Groben R, Guillou L, Lange M, Medlin LK. The Journal of eukaryotic microbiology. -. 10651300
In situ analysis of sulfate-reducing bacteria related to Desulfocapsa thiozymogenes in the chemocline of meromictic Lake Cadagno (Switzerland). Tonolla M, Demarta A, Peduzzi S, Hahn D, Peduzzi R. Applied and environmental microbiology. 2000. 10653757
A selective medium and a specific probe for detection of Vibrio vulnificus. Cerdà-Cuéllar M, Jofre J, Blanch AR. Applied and environmental microbiology. 2000. 10653765
Specific and rapid detection by fluorescent in situ hybridization of bacteria in clinical samples obtained from cystic fibrosis patients. Hogardt M, Trebesius K, Geiger AM, Hornef M, Rosenecker J, Heesemann J. Journal of clinical microbiology. 2000. 10655391
Fluorescent In situ hybridization allows rapid identification of microorganisms in blood cultures. Kempf VA, Trebesius K, Autenrieth IB. Journal of clinical microbiology. 2000. 10655393