List of references at probeBase

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Reference title Pubmed-ID
Rapid detection and quantification of members of the archaeal community by quantitative PCR using fluorogenic probes. Takai K, Horikoshi K. Applied and environmental microbiology. 2000. 11055964
Polyphasic microbial community analysis of petroleum hydrocarbon-contaminated soils from two northern Canadian communities. Juck D, Charles T, Whyte LG, Greer CW. FEMS microbiology ecology. 2000. 11098075
Investigation of candidate division TM7, a recently recognized major lineage of the domain Bacteria with no known pure-culture representatives. Hugenholtz P, Tyson GW, Webb RI, Wagner AM, Blackall LL. Applied and environmental microbiology. 2001. 11133473
Characterization of microbial consortia in a terephthalate-degrading anaerobic granular sludge system. Wu JH, Liu WT, Tseng IC, Cheng SS. Microbiology (Reading, England). 2001. 11158354
Phylogeny and in situ identification of a morphologically conspicuous bacterium, Candidatus Magnospira bakii, present at very low frequency in activated sludge. Snaidr J, Fuchs B, Wallner G, Wagner M, Schleifer KH, Amann R. Environmental microbiology. 1999. 11207728
Anaerobic utilization of alkylbenzenes and n-alkanes from crude oil in an enrichment culture of denitrifying bacteria affiliating with the beta-subclass of Proteobacteria. Rabus R, Wilkes H, Schramm A, Harms G, Behrends A, Amann R, Widdel F. Environmental microbiology. 1999. 11207730
Desulfotomaculum genus- and subgenus-specific 16S rRNA hybridization probes for environmental studies. Hristova KR, Mau M, Zheng D, Aminov RI, Mackie RI, Gaskins HR, Raskin L. Environmental microbiology. 2000. 11220301
Community structure and activity dynamics of nitrifying bacteria in a phosphate-removing biofilm. Gieseke A, Purkhold U, Wagner M, Amann R, Schramm A. Applied and environmental microbiology. 2001. 11229931
A nested array of rRNA targeted probes for the detection and identification of enterococci by reverse hybridization. Behr T, Koob C, Schedl M, Mehlen A, Meier H, Knopp D, Frahm E, Obst U, Schleifer K, Niessner R, Ludwig W. Systematic and applied microbiology. 2000. 11249027
In situ identification of polyphosphate- and polyhydroxyalkanoate-accumulating traits for microbial populations in a biological phosphorus removal process. Liu WT, Nielsen AT, Wu JH, Tsai CS, Matsuo Y, Molin S. Environmental microbiology. 2001. 11321541
Endosymbiotic sulphate-reducing and sulphide-oxidizing bacteria in an oligochaete worm. Dubilier N, Mülders C, Ferdelman T, de Beer D, Pernthaler A, Klein M, Wagner M, Erséus C, Thiermann F, Krieger J, Giere O, Amann R. Nature. 2001. 11357130
Changes in bacterial community composition and dynamics and viral mortality rates associated with enhanced flagellate grazing in a mesoeutrophic reservoir. Simek K, Pernthaler J, Weinbauer MG, Hornák K, Dolan JR, Nedoma J, Masín M, Amann R. Applied and environmental microbiology. 2001. 11375187
Fusobacterium prausnitzii and related species represent a dominant group within the human fecal flora. Suau A, Rochet V, Sghir A, Gramet G, Brewaeys S, Sutren M, Rigottier-Gois L, Doré J. Systematic and applied microbiology. 2001. 11403393
Development of 18S rRNA-targeted oligonucleotide probes for specific detection of Hartmannella and Naegleria in Legionella-positive environmental samples. Grimm D, Ludwig WF, Brandt BC, Michel R, Schleifer KH, Hacker J, Steinert M. Systematic and applied microbiology. 2001. 11403402
Linking the composition of bacterioplankton to rapid turnover of dissolved dimethylsulphoniopropionate in an algal bloom in the North Sea. Zubkov MV, Fuchs BM, Archer SD, Kiene RP, Amann R, Burkill PH. Environmental microbiology. 2001. 11422317
Closely related Prochlorococcus genotypes show remarkably different depth distributions in two oceanic regions as revealed by in situ hybridization using 16S rRNA-targeted oligonucleotides. West NJ, Schönhuber WA, Fuller NJ, Amann RI, Rippka R, Post AF, Scanlan DJ. Microbiology (Reading, England). 2001. 11429451
Group-specific 16S rRNA targeted probes for the detection of type I and type II methanotrophs by fluorescence in situ hybridisation. Eller G, Stubner S, Frenzel P. FEMS microbiology letters. 2001. 11430414
Structure and diversity of Gram-negative sulfate-reducing bacteria on rice roots. Scheid D, Stubner S. FEMS microbiology ecology. 2001. 11451522
Development of specific oligonucleotide probes for the identification and in situ detection of hydrocarbon-degrading Alcanivorax strains. Syutsubo K, Kishira H, Harayama S. Environmental microbiology. 2001. 11472502
Mealybug beta-proteobacterial endosymbionts contain gamma-proteobacterial symbionts. von Dohlen CD, Kohler S, Alsop ST, McManus WR. Nature. 2001. 11473316
Direct detection of thermotolerant campylobacters in chicken products by PCR and in situ hybridization. Moreno Y, Her?andez M, Ferrús MA, Alonso JL, Botella S, Montes R, Hernández J. Research in microbiology. -. 11501676
Members of the Cytophaga-Flavobacterium-Bacteroides phylum as intracellular bacteria of acanthamoebae: proposal of 'Candidatus Amoebophilus asiaticus'. Horn M, Harzenetter MD, Linner T, Schmid EN, Müller KD, Michel R, Wagner M. Environmental microbiology. 2001. 11553234
16S-23S rDNA intergenic spacer and 23S rDNA of anaerobic ammonium-oxidizing bacteria: implications for phylogeny and in situ detection. Schmid M, Schmitz-Esser S, Jetten M, Wagner M. Environmental microbiology. 2001. 11553235
Family- and genus-level 16S rRNA-targeted oligonucleotide probes for ecological studies of methanotrophic bacteria. Gulledge J, Ahmad A, Steudler PA, Pomerantz WJ, Cavanaugh CM. Applied and environmental microbiology. 2001. 11571178
Detection and enumeration of methanotrophs in acidic Sphagnum peat by 16S rRNA fluorescence in situ hybridization, including the use of newly developed oligonucleotide probes for Methylocella palustris. Dedysh SN, Derakshani M, Liesack W. Applied and environmental microbiology. 2001. 11571193