List of references at probeBase

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Reference title Pubmed-ID
Group-Specific 16S rRNA-Targeted Oligonucleotide Probes To Identify Thermophilic Bacteria in Marine Hydrothermal Vents. Harmsen H, Prieur D, Jeanthon C. Applied and environmental microbiology. 1997. 16535717
Multivariate analysis of microbial communities in the River Elbe (Germany) on different phylogenetic and spatial levels of resolution. Kloep F, Manz W, Röske I. FEMS microbiology ecology. 2006. 16542407
Adhesion of Lactobacillus plantarum 423 and Lactobacillus salivarius 241 to the intestinal tract of piglets, as recorded with fluorescent in situ hybridization (FISH), and production of plantaricin 423 by cells colonized to the ileum. Maré L, Wolfaardt GM, Dicks LM. Journal of applied microbiology. 2006. 16553740
Comparison of vertical distributions of prokaryotic assemblages in the anoxic Cariaco Basin and Black Sea by use of fluorescence in situ hybridization. Lin X, Wakeham SG, Putnam IF, Astor YM, Scranton MI, Chistoserdov AY, Taylor GT. Applied and environmental microbiology. 2006. 16597973
Numbers and locations of native bacteria on field-grown wheat roots quantified by fluorescence in situ hybridization (FISH). Watt M, Hugenholtz P, White R, Vinall K. Environmental microbiology. 2006. 16623744
Colonization of barley (Hordeum vulgare) with Salmonella enterica and Listeria spp. Kutter S, Hartmann A, Schmid M. FEMS microbiology ecology. 2006. 16629755
Candidatus "Anammoxoglobus propionicus" a new propionate oxidizing species of anaerobic ammonium oxidizing bacteria. Kartal B, Rattray J, van Niftrik LA, van de Vossenberg J, Schmid MC, Webb RI, Schouten S, Fuerst JA, Damsté JS, Jetten MS, Strous M. Systematic and applied microbiology. 2007. 16644170
Rapid detection of Brucella spp. in blood cultures by fluorescence in situ hybridization. Wellinghausen N, Nöckler K, Sigge A, Bartel M, Essig A, Poppert S. Journal of clinical microbiology. 2006. 16672413
Potential of a 16S rRNA-based taxonomic microarray for analyzing the rhizosphere effects of maize on Agrobacterium spp. and bacterial communities. Sanguin H, Remenant B, Dechesne A, Thioulouse J, Vogel TM, Nesme X, Moënne-Loccoz Y, Grundmann GL. Applied and environmental microbiology. 2006. 16751545
Occurrence and activity of human intestinal bacteria involved in the conversion of dietary lignans. Clavel T, Borrmann D, Braune A, Doré J, Blaut M. Anaerobe. 2006. 16765860
Design and evaluation of 16S rRNA sequence based oligonucleotide probes for the detection and quantification of Comamonas testosteroni in mixed microbial communities. Bathe S, Hausner M. BMC microbiology. 2006. 16772028
A DNA microarray platform based on direct detection of rRNA for characterization of freshwater sediment-related prokaryotic communities. Peplies J, Lachmund C, Glöckner FO, Manz W. Applied and environmental microbiology. 2006. 16820477
Nitrite concentration influences the population structure of Nitrospira-like bacteria. Maixner F, Noguera DR, Anneser B, Stoecker K, Wegl G, Wagner M, Daims H. Environmental microbiology. 2006. 16872410
Microbial diversity in the deep sea and the underexplored "rare biosphere". Sogin ML, Morrison HG, Huber JA, Mark Welch D, Huse SM, Neal PR, Arrieta JM, Herndl GJ. Proceedings of the National Academy of Sciences of the United States of America. 2006. 16880384
Dominant microbial populations in limestone-corroding stream biofilms, Frasassi cave system, Italy. Macalady JL, Lyon EH, Koffman B, Albertson LK, Meyer K, Galdenzi S, Mariani S. Applied and environmental microbiology. 2006. 16885314
Impact of prehybridization PCR amplification on microarray detection of nitrifying bacteria in wastewater treatment plant samples. Siripong S, Kelly JJ, Stahl DA, Rittmann BE. Environmental microbiology. 2006. 16913917
Advantage of using inosine at the 3' termini of 16S rRNA gene universal primers for the study of microbial diversity. Ben-Dov E, Shapiro OH, Siboni N, Kushmaro A. Applied and environmental microbiology. 2006. 16950904
Molecular epidemiology of oral treponemes in patients with periodontitis and in periodontitis-resistant subjects. Moter A, Riep B, Haban V, Heuner K, Siebert G, Berning M, Wyss C, Ehmke B, Flemmig TF, Göbel UB. Journal of clinical microbiology. 2006. 16954230
Molecular diversity, cultivation, and improved detection by fluorescent in situ hybridization of a dominant group of human gut bacteria related to Roseburia spp. or Eubacterium rectale. Aminov RI, Walker AW, Duncan SH, Harmsen HJ, Welling GW, Flint HJ. Applied and environmental microbiology. 2006. 16957265
Ecophysiology of different filamentous Alphaproteobacteria in industrial wastewater treatment plants. Kragelund C, Kong Y, van der Waarde J, Thelen K, Eikelboom D, Tandoi V, Thomsen TR, Nielsen PH. Microbiology (Reading, England). 2006. 17005981
Archaeal diversity in Icelandic hot springs. Kvist T, Ahring BK, Westermann P. FEMS microbiology ecology. 2007. 17014681
Blooms of single bacterial species in a coastal lagoon of the southwestern Atlantic Ocean. Piccini C, Conde D, Alonso C, Sommaruga R, Pernthaler J. Applied and environmental microbiology. 2006. 17021206
Analysis of diversity and activity of sulfate-reducing bacterial communities in sulfidogenic bioreactors using 16S rRNA and dsrB genes as molecular markers. Dar SA, Yao L, van Dongen U, Kuenen JG, Muyzer G. Applied and environmental microbiology. 2007. 17098925
Criblamydia sequanensis, a new intracellular Chlamydiales isolated from Seine river water using amoebal co-culture. Thomas V, Casson N, Greub G. Environmental microbiology. 2006. 17107554
Evidence for the involvement of betaproteobacterial Thiobacilli in the nitrate-dependent oxidation of iron sulfide minerals. Haaijer SC, Van der Welle ME, Schmid MC, Lamers LP, Jetten MS, Op den Camp HJ. FEMS microbiology ecology. 2006. 17117988