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Details of the microarray

Array name	Description	Technique	Reference
Freshwater Sediment-Microarray	Oligonucleotide microarray (microchip) for characterization of bacterial communities in freshwater sediments. The microarray contains 70 16S rRNA-targeted oligonucleotides of parallel and hierarchical specificity designed according to the multiple probe concept.	Oligonucleotide probes with a 6 polyadenosine triphosphate spacer-element and amino-modification at the 5'-terminal end were spotted on GAPS II aminosilane-coated glass slides using a SpotArray24 spotting device with TeleChem Stealth pins.	A DNA microarray platform based on direct detection of rRNA for characterization of freshwater sediment-related prokaryotic communities. Peplies J, Lachmund C, Glöckner FO, Manz W. Applied and environmental microbiology. 2006. Pubmed: 16820477

The following probes are part of the array:

ACA652 (ACA23A) (pB-12), ALF968 (pB-21), Am445 (pB-22), Am976 (pB-23), ARCH915 (ARC915) (pB-27), AT1458 (pB-28), Azo1251 (pB-29), BAC303 (pB-31), BONE23A (pB-39), BTWO23A (pB-40), CF319a (pB-42), CF319b (pB-43), CFB286 (pB-45), CYA361 (pB-56), 221(DBM221) (pB-62), DSMA488 (pB-81), DSS658 (pB-84), DSV1292 (pB-86), 687(DSV687) (pB-90), EUB338 (Bact338) (bacterial) (pB-159), EUB338 II (SBACT P 338) (pB-160), EUB338 III (SBACT V 338) (pB-161), LEG705 (pB-193), LGC354A (pB-195), LGC354B (pB-196), LGC354C (pB-197), NIT3 (pB-241), Nsm156 (pB-247), Nso1225 (pB-248), Nso190 (pB-249), Ntspa662 (pB-253), PAR651 (pB-279), PLA46 (pB-283), Ppu56a (pB-287), SRB385 (SRB) (pB-300), SRB385Db (pB-301), UNIV1390 (pB-327), Str (pB-358), Pae997 (pB-371), NEU (pB-382), Amx820 (pB-409), Enterbact D (pB-607), NSR826 (pB-625), NSR1156 (pB-626), EUK1195 (pB-722), III1421 (pB-996), BLS1295 (pB-1003), EURY496 (pB-790), EURY499 (pB-791), EURY514 (pB-792), LDI (pB-888), SNA (pB-889), ALBO577 (pB-912), ENT183 (pB-914), Strc493 (pB-964), LGC (pB-1040), Clost I (pB-1041), AMAR 839 (pB-1044), LGC353b (pB-1070), Flavo1004 (pB-1245), CLOBU1022 (pB-1246), AERO1244 (pB-1247), HGC236 (pB-1248), Ppu646 (pB-1249), MYBM1171 (pB-1251), AcI-840-1 (AC840a) (pB-1252), AcI-840-2 (AC840b) (pB-1253), AcI-1214 (pB-1254), AQUA841 (pB-1250)