Tested for in situ hybridization.
| Accession no. | pB-339 |
| Full name (Alm et al.) | - |
| Categories |
methylotrophic bacteria |
| Specificity | type II methanotrophs (Methylosinus/Methylocystis spp.) |
| Taxonomy | Methylocystaceae; Hyphomicrobiales; Alphaproteobacteria; Pseudomonadota; Pseudomonadati; Bacteria; cellular organisms |
| Sequence | 5'-ATC CAG GTA CCG TCA TTA TC-3' |
| Length [nt] | 20 |
| G+C content [%] | 45 |
| Target rRNA | 16S |
| Position | 450-469 |
| Formamide | 20 (30) |
| Check specificity/coverage |
SILVA TestProbe |
| References |
Group-specific 16S rRNA targeted probes for the detection of type I and type II methanotrophs by fluorescence in situ hybridisation. Eller G, Stubner S, Frenzel P. FEMS microbiology letters. 2001. Pubmed: 11430414 Differential detection of type II methanotrophic bacteria in acidic peatlands using newly developed 16S rRNA-targeted fluorescent oligonucleotide probes. Dedysh SN, Dunfield PF, Derakshani M, Stubner S, Heyer J, Liesack W. FEMS microbiology ecology. 2003. Pubmed: 19719661 |
| Remarks | 30 % FA used by Dedysh et al. (2003) |