List of probes and primers

198 probes found.

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Probe name Full name (Alm et al.) Category Target rRNA Specificity FISH Primer
Amx1900 L-*-Amx-1900-a-A-21 bacteria of relevance in wastewater treatment, anaerobic ammonium-oxidizing bacteria 23S anaerobic ammonium-oxidizing bacteria, Candidatus `Brocadia anammoxidansapos and Candidatus `Kuenenia stuttgartiensisapos ✔ ✘
Kst157 S-S-Kst-0157-a-A-18 bacteria of relevance in wastewater treatment, anaerobic ammonium-oxidizing bacteria 16S Candidatus Kuenenia stuttgartiensis ✔ ✘
Ban162 (B. anam.) S-S-Ban-0162(B. anam.)-a-A-18 bacteria of relevance in wastewater treatment, anaerobic ammonium-oxidizing bacteria 16S Candidatus Brocadia anammoxidans ✔ ✘
Amx820 S-*-Amx-0820-a-A-22 bacteria of relevance in wastewater treatment, anaerobic ammonium-oxidizing bacteria 16S anaerobic ammonium-oxidizing bacteria, Candidatus `Brocadia anammoxidansapos and Candidatus `Kuenenia stuttgartiensisapos ✔ ✘
RHC175a S-*-RHC-0175-a-A-18 bacteria of relevance in wastewater treatment 16S Most members of the Dechloromonas-Ferribacterium-Quadricoccus-Azonexus, the Azospira, and the Rhodocyclus-Propionivibrio-Accumulibacter lineages ✘ ✘
RHC439 S-*-RHC-0439-a-A-18 bacteria of relevance in wastewater treatment 16S Rhodocyclus spp., most member of the Candidatus Accumulibacter cluster, Azospira lineage ✔ ✘
RHW456 S-G-Rhw-0456-a-A-18 bacteria of relevance in wastewater treatment 16S Bio-P enrichment culture clone R1 ✔ ✘
RHW991 S-G-Rhw-0991-a-A-18 bacteria of relevance in wastewater treatment 16S Bio-P enrichment culture clone R1 ✔ ✘
RHX456 S-G-Rhx-0456-a-A-17 bacteria of relevance in wastewater treatment 16S Candidatus Accumulibacter phosphatis (clone R6) ✔ ✘
RHX991 S-G-Rhx-0991-a-A-18 bacteria of relevance in wastewater treatment 16S Candidatus Accumulibacter phosphatis (clone R6) ✔ ✘
CHL 1851 S-F-t1851-0592-a-A-20 bacteria of relevance in wastewater treatment 16S filamentous bacterium Eikelboom Type 1851 ✔ ✘
Gam1019 S-S-g-Prot-1019-a-A-18 bacteria of relevance in wastewater treatment 16S phosphate accumulating bacteria (Gammaproteobacteria) ✔ ✘
Gam1278 S-S-g-Prot-1278-a-A-20 bacteria of relevance in wastewater treatment 16S phosphate accumulating bacteria (Gammaproteobacteria) ✔ ✘
PAO846 S-S-Rhodo-0846-a-A-18 bacteria of relevance in wastewater treatment 16S Candidatus Accumulibacter phosphatis ✔ ✘
actino-1011 S-S-HGC-1011-a-A-19 bacteria of relevance in wastewater treatment 16S Tetrasphaera japonica, enhanced biological phosphorus removal clone Ebpr19, Ebpr20 (Actinobacteria) ✔ ✘
NSR826 — bacteria of relevance in wastewater treatment, nitrite-oxidizing bacteria 16S Nitrospira moscoviensis, freshwater Nitrospira spp. ✔ ✘
NSR1156 — bacteria of relevance in wastewater treatment, nitrite-oxidizing bacteria 16S Nitrospira moscoviensis, freshwater Nitrospira spp. ✔ ✘
NSR447 — bacteria of relevance in wastewater treatment, nitrite-oxidizing bacteria 16S Nitrospira spp. ✔ ✘
MNP1 — bacteria of relevance in wastewater treatment 16S nocardioform actinomycetes ✔ ✘
MLP — bacteria of relevance in wastewater treatment 16S Mycobacterium sp. SMKN23, Mycobacterium sp. SMKN22, (nocardioform actinomycetes) ✔ ✘
DLP — bacteria of relevance in wastewater treatment 16S nocardioform actinomycete sp. ✔ ✘
GLP1 — bacteria of relevance in wastewater treatment 16S Gordona sp. SMKN27, Gordona sp. SMKN12, Gordona sp. SMKN17, Gordona sp. SMKN14, (nocardioform actinomycetes) ✔ ✘
GLP2 — bacteria of relevance in wastewater treatment 16S Gordona sp. SMKN29, Gordona sp. SMKN15, (nocardioform actinomycetes) ✔ ✘
GLP3 — bacteria of relevance in wastewater treatment 16S nocardioform actinomycete sp. ✔ ✘
b-AO233 — bacteria of relevance in wastewater treatment, ammonia-oxidizing bacteria 16S Betaproteobacterial ammonia-oxidizing bacteria ✘ ✘